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    LOC106379224 nuclear transcription factor Y subunit A-1-like [ Brassica napus (rape) ]

    Gene ID: 106379224, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC106379224
    Gene description
    nuclear transcription factor Y subunit A-1-like
    Locus tag
    HID58_045310
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica napus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC106379224 in Genome Data Viewer
    Location:
    chromosome: C2
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current Da-Ae (GCF_020379485.1) C2 NC_063445.1 (2369481..2371356, complement)
    101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C2 NC_027768.2 (3008245..3010154, complement)

    Chromosome C2 - NC_063445.1Genomic Context describing neighboring genes Neighboring gene DDT domain-containing protein PTM Neighboring gene wax ester synthase/diacylglycerol acyltransferase 7-like Neighboring gene U6 spliceosomal RNA Neighboring gene zinc finger CCCH domain-containing protein 56-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear transcription factor Y subunit A-1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Da-Ae Primary Assembly

    Genomic

    1. NC_063445.1 Reference Da-Ae Primary Assembly

      Range
      2369481..2371356 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013819229.3 → XP_013674683.1  nuclear transcription factor Y subunit A-1-like

      UniProtKB/TrEMBL
      A0A816JWB4
      Conserved Domains (1) summary
      pfam02045
      Location:134 → 188
      CBFB_NFYA; CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
    Nucleotide Protein
    Heading Accession and Version

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