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    LOC106363703 homeobox-leucine zipper protein ATHB-6-like [ Brassica napus (rape) ]

    Gene ID: 106363703, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC106363703
    Gene description
    homeobox-leucine zipper protein ATHB-6-like
    Locus tag
    HID58_036160
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Brassica napus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See LOC106363703 in Genome Data Viewer
    Location:
    chromosome: A9
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current Da-Ae (GCF_020379485.1) A9 NC_063442.1 (39560726..39577036)
    101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) A9 NC_027765.2 (6240801..6251728)

    Chromosome A9 - NC_063442.1Genomic Context describing neighboring genes Neighboring gene classical arabinogalactan protein 2 Neighboring gene monofunctional riboflavin biosynthesis protein RIBA 2, chloroplastic Neighboring gene signal peptidase complex subunit 1 Neighboring gene peroxidase 17-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox-leucine zipper protein ATHB-6-like
    Names
    homeodomain-leucine zipper protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001315814.1 → NP_001302743.1  homeobox-leucine zipper protein ATHB-6-like

      Status: PROVISIONAL

      Source sequence(s)
      AY336103
      UniProtKB/TrEMBL
      Q69G85
      Conserved Domains (2) summary
      pfam00046
      Location:62 → 115
      Homeobox; Homeobox domain
      pfam02183
      Location:117 → 158
      HALZ; Homeobox associated leucine zipper

    RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Da-Ae Primary Assembly

    Genomic

    1. NC_063442.1 Reference Da-Ae Primary Assembly

      Range
      39560726..39577036
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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