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    ano5b anoctamin 5b [ Clupea harengus (Atlantic herring) ]

    Gene ID: 105907208, updated on 18-Jun-2024

    Summary

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    Gene symbol
    ano5b
    Gene description
    anoctamin 5b
    See related
    Ensembl:ENSCHAG00020015234
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Clupea harengus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Clupei; Clupeiformes; Clupeoidei; Clupeidae; Clupea
    Orthologs
    zebrafish all
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    Genomic context

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    See ano5b in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    102 current Ch_v2.0.2 (GCF_900700415.2) 20 NC_045171.1 (20664608..20723575, complement)

    Chromosome 20 - NC_045171.1Genomic Context describing neighboring genes Neighboring gene phospholipase A and acyltransferase 4-like Neighboring gene zinc transporter ZIP13-like Neighboring gene solute carrier family 17 member 6b Neighboring gene uncharacterized LOC116225146 Neighboring gene cap methyltransferase 2 Neighboring gene calretinin-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045171.1 Chromosome 20 Reference Ch_v2.0.2 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chloride channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chloride transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    anoctamin-5b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Clupea harengus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Ch_v2.0.2 Primary Assembly

    Genomic

    1. NC_045171.1 Reference Ch_v2.0.2 Primary Assembly

      Range
      20664608..20723575 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031586882.2 → XP_031442742.1  anoctamin-5b isoform X1

      UniProtKB/TrEMBL
      A0A6P8H4Z3
      Related
      ENSCHAP00020034482.1, ENSCHAT00020036848.1
      Conserved Domains (2) summary
      pfam04547
      Location:280 → 864
      Anoctamin; Calcium-activated chloride channel
      pfam16178
      Location:60 → 277
      Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

    2. XM_031586884.2 → XP_031442744.1  anoctamin-5b isoform X2

      UniProtKB/TrEMBL
      A0A6P8GU98
      Related
      ENSCHAP00020034483.1, ENSCHAT00020036849.1
      Conserved Domains (2) summary
      pfam04547
      Location:273 → 857
      Anoctamin; Calcium-activated chloride channel
      pfam16178
      Location:53 → 270
      Anoct_dimer; dimerization domain of Ca+-activated chloride-channel, anoctamin

    RNA

    1. XR_006153012.1 RNA Sequence

      Related
      ENSCHAT00020036793.1
    Nucleotide Protein
    Heading Accession and Version

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