U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    EPHA1 EPH receptor A1 [ Propithecus coquereli (Coquerel's sifaka) ]

    Gene ID: 105815437, updated on 11-Apr-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    EPHA1
    Gene description
    EPH receptor A1
    See related
    Ensembl:ENSPCOG00000025361
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Propithecus coquereli
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Strepsirrhini; Lemuriformes; Indriidae; Propithecus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See EPHA1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    100 current Pcoq_1.0 (GCF_000956105.1) Unplaced Scaffold NW_012148997.1 (1900333..1915711)

    NW_012148997.1Genomic Context describing neighboring genes Neighboring gene taste receptor type 2 member 41-like Neighboring gene taste 2 receptor member 60 Neighboring gene zyxin Neighboring gene family with sequence similarity 131 member B

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_012148997.1 Unplaced Scaffold Reference Pcoq_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane-ephrin receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ephrin type-A receptor 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Propithecus coquereli Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Pcoq_1.0 Primary Assembly

    Genomic

    1. NW_012148997.1 Reference Pcoq_1.0 Primary Assembly

      Range
      1900333..1915711
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012650587.1 → XP_012506041.1  ephrin type-A receptor 1 isoform X1

      UniProtKB/TrEMBL
      A0A2K6GIQ6
      Related
      ENSPCOP00000026104.1, ENSPCOT00000036824.1
      Conserved Domains (8) summary
      cd09542
      Location:911 → 973
      SAM_EPH-A1; SAM domain of EPH-A1 subfamily of tyrosine kinase receptors
      smart00454
      Location:910 → 975
      SAM; Sterile alpha motif
      cd10479
      Location:26 → 202
      EphR_LBD_A1; Ligand Binding Domain of Ephrin type-A Receptor 1
      cd12841
      Location:535 → 572
      TM_EphA1; Transmembrane domain of Ephrin Receptor A1 Protein Tyrosine Kinase
      cd00063
      Location:452 → 534
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:333 → 424
      fn3; Fibronectin type III domain
      pfam07714
      Location:623 → 879
      Pkinase_Tyr; Protein tyrosine kinase
      cl21453
      Location:618 → 883
      PKc_like; Protein Kinases, catalytic domain

    2. XM_012650588.1 → XP_012506042.1  ephrin type-A receptor 1 isoform X2

      UniProtKB/TrEMBL
      A0A2K6GIQ6
      Conserved Domains (8) summary
      cd09542
      Location:882 → 944
      SAM_EPH-A1; SAM domain of EPH-A1 subfamily of tyrosine kinase receptors
      smart00454
      Location:881 → 946
      SAM; Sterile alpha motif
      cd10479
      Location:1 → 173
      EphR_LBD_A1; Ligand Binding Domain of Ephrin type-A Receptor 1
      cd12841
      Location:506 → 543
      TM_EphA1; Transmembrane domain of Ephrin Receptor A1 Protein Tyrosine Kinase
      cd00063
      Location:423 → 505
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:304 → 395
      fn3; Fibronectin type III domain
      pfam07714
      Location:594 → 850
      Pkinase_Tyr; Protein tyrosine kinase
      cl21453
      Location:589 → 854
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.