U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC105779902 transcription factor SRM1 [ Gossypium raimondii (Peruvian cotton) ]

    Gene ID: 105779902, updated on 23-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC105779902
    Gene description
    transcription factor SRM1
    Locus tag
    B456_012G135600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gossypium raimondii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC105779902 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current ASM2569854v1 (GCF_025698545.1) 4 NC_068568.1 (4540395..4544431)
    100 previous assembly Graimondii2_0 (GCF_000327365.1) 12 NC_026940.1 (30883730..30887869, complement)

    Chromosome 4 - NC_068568.1Genomic Context describing neighboring genes Neighboring gene probable protein arginine N-methyltransferase 6 Neighboring gene mitochondrial import receptor subunit TOM40-1 Neighboring gene uncharacterized LOC105780338 Neighboring gene FAD synthetase 2, chloroplastic

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    transcription factor SRM1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2569854v1 Primary Assembly

    Genomic

    1. NC_068568.1 Reference ASM2569854v1 Primary Assembly

      Range
      4540395..4544431
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_052629295.1 → XP_052485255.1  transcription factor SRM1

      UniProtKB/TrEMBL
      A0A0D2VZ46

    2. XM_012603888.2 → XP_012459342.1  transcription factor SRM1

      See identical proteins and their annotated locations for XP_012459342.1

      UniProtKB/TrEMBL
      A0A0D2VZ46
      Conserved Domains (3) summary
      TIGR01557
      Location:115 → 167
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      smart00717
      Location:119 → 166
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd00167
      Location:11 → 57
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    3. XM_012603883.2 → XP_012459337.1  transcription factor SRM1

      See identical proteins and their annotated locations for XP_012459337.1

      UniProtKB/TrEMBL
      A0A0D2VZ46
      Conserved Domains (3) summary
      TIGR01557
      Location:115 → 167
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      smart00717
      Location:119 → 166
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd00167
      Location:11 → 57
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    4. XM_012603894.2 → XP_012459348.1  transcription factor SRM1

      See identical proteins and their annotated locations for XP_012459348.1

      UniProtKB/TrEMBL
      A0A0D2VZ46
      Conserved Domains (3) summary
      TIGR01557
      Location:115 → 167
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      smart00717
      Location:119 → 166
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd00167
      Location:11 → 57
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    5. XM_012603884.1 → XP_012459338.1  transcription factor SRM1

      See identical proteins and their annotated locations for XP_012459338.1

      UniProtKB/TrEMBL
      A0A0D2VZ46
      Conserved Domains (3) summary
      TIGR01557
      Location:115 → 167
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      smart00717
      Location:119 → 166
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd00167
      Location:11 → 57
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases