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    LOC105762209 uncharacterized LOC105762209 [ Gossypium raimondii (Peruvian cotton) ]

    Gene ID: 105762209, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC105762209
    Gene description
    uncharacterized LOC105762209
    Locus tag
    B456_008G172300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gossypium raimondii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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    Genomic context

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    See LOC105762209 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    101 current ASM2569854v1 (GCF_025698545.1) 12 NC_068576.1 (45269250..45270005)
    100 previous assembly Graimondii2_0 (GCF_000327365.1) 8 NC_026936.1 (44730326..44731183)

    Chromosome 12 - NC_068576.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105764413 Neighboring gene peroxidase 27 Neighboring gene 2-methylpropanoate--CoA ligase CCL4-like Neighboring gene MYB-like transcription factor ETC1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables proteasome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC105762209

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gossypium raimondii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2569854v1 Primary Assembly

    Genomic

    1. NC_068576.1 Reference ASM2569854v1 Primary Assembly

      Range
      45269250..45270005
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012580103.2 → XP_012435557.1  uncharacterized protein LOC105762209

      See identical proteins and their annotated locations for XP_012435557.1

      UniProtKB/TrEMBL
      A0A0D2U4L0
      Conserved Domains (3) summary
      smart00213
      Location:84 → 155
      UBQ; Ubiquitin homologues
      pfam00240
      Location:90 → 156
      ubiquitin; Ubiquitin family
      cl00155
      Location:8 → 74
      UBQ; Ubiquitin-like proteins
    Nucleotide Protein
    Heading Accession and Version

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