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    PKD1L3 polycystin 1 like 3, transient receptor potential channel interacting [ Odobenus rosmarus divergens (Pacific walrus) ]

    Gene ID: 105757958, updated on 13-Mar-2024

    Summary

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    Gene symbol
    PKD1L3
    Gene description
    polycystin 1 like 3, transient receptor potential channel interacting
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Odobenus rosmarus divergens (sub-species: divergens)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Odobenidae; Odobenus
    Orthologs
    human mouse all
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    Genomic context

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    See PKD1L3 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    101 current Oros_1.0 (GCF_000321225.1) Unplaced Scaffold NW_004450279.1 (1439039..1509146, complement)

    NW_004450279.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 821 Neighboring gene IST1 homolog Neighboring gene dihydroorotate dehydrogenase (quinone) Neighboring gene haptoglobin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004450279.1 Unplaced Scaffold Reference Oros_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in detection of mechanical stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Odobenus rosmarus divergens Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Oros_1.0 Primary Assembly

    Genomic

    1. NW_004450279.1 Reference Oros_1.0 Primary Assembly

      Range
      1439039..1509146 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012565704.1 → XP_012421158.1  LOW QUALITY PROTEIN: polycystic kidney disease protein 1-like 3

      Conserved Domains (4) summary
      cd00037
      Location:33 → 137
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
      pfam08016
      Location:1296 → 1705
      PKD_channel; Polycystin cation channel
      cl00011
      Location:717 → 833
      PLAT; PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and ...
      cl02559
      Location:608 → 647
      GPS; GPCR proteolysis site, GPS, motif
    Nucleotide Protein
    Heading Accession and Version

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