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    LOC105636212 60S ribosomal protein L7-2 [ Jatropha curcas ]

    Gene ID: 105636212, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC105636212
    Gene description
    60S ribosomal protein L7-2
    Locus tag
    JCGZ_08960
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Jatropha curcas
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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    Genomic context

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    See LOC105636212 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current RJC1_Hi-C (GCF_014843425.1) Unplaced Scaffold NW_023590789.1 (2088441..2090913)
    101 previous assembly JatCur_1.0 (GCF_000696525.1) Unplaced Scaffold NW_012124337.1 (501080..503529)

    NW_023590789.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105630548 Neighboring gene probable inactive purple acid phosphatase 1 Neighboring gene uncharacterized LOC119369637 Neighboring gene phosphatidylinositol/phosphatidylcholine transfer protein SFH9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    60S ribosomal protein L7-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Jatropha curcas Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference RJC1_Hi-C Primary Assembly

    Genomic

    1. NW_023590789.1 Reference RJC1_Hi-C Primary Assembly

      Range
      2088441..2090913
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012219419.3 → XP_012074809.1  60S ribosomal protein L7-2

      See identical proteins and their annotated locations for XP_012074809.1

      UniProtKB/TrEMBL
      A0A067KHB6
      Conserved Domains (3) summary
      cd01657
      Location:86 → 245
      Ribosomal_L7_archeal_euk; Ribosomal protein L7, which is found in archaea and eukaryotes but not in prokaryotes, binds domain II of the 23S rRNA as well as the 5S rRNA and is one of five ribosomal proteins that mediate the interactions 5S rRNA makes with the ribosome. The ...
      TIGR01310
      Location:13 → 245
      uL30_euk; 60S ribosomal protein uL30, eukaryotic form
      pfam08079
      Location:14 → 84
      Ribosomal_L30_N; Ribosomal L30 N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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