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    LOC105434547 transcription factor DICHOTOMA [ Cucumis sativus (cucumber) ]

    Gene ID: 105434547, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC105434547
    Gene description
    transcription factor DICHOTOMA
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC105434547 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 1 NC_026655.2 (2248519..2250656)
    101 previous assembly ASM407v2 (GCF_000004075.2) 1 NC_026655.1 (2221315..2223367)

    Chromosome 1 - NC_026655.2Genomic Context describing neighboring genes Neighboring gene oleosin 1 Neighboring gene general transcription factor IIE subunit 1 Neighboring gene uncharacterized LOC116402124 Neighboring gene DNA mismatch repair protein MSH2 Neighboring gene uncharacterized LOC101215825

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of secondary shoot formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor DICHOTOMA

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026655.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      2248519..2250656
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011650447.2 → XP_011648749.1  transcription factor DICHOTOMA

      UniProtKB/TrEMBL
      A0A0A0LPQ9
      Conserved Domains (1) summary
      pfam03634
      Location:99 → 163
      TCP; TCP family transcription factor
    Nucleotide Protein
    Heading Accession and Version

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