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    LOC105372558 uncharacterized LOC105372558 [ Homo sapiens (human) ]

    Gene ID: 105372558, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC105372558
    Gene description
    uncharacterized LOC105372558
    See related
    Ensembl:ENSG00000225280
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105372558 in Genome Data Viewer
    Location:
    20p11.22
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (21396863..21441456)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (21453521..21498110)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17621 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17622 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17623 Neighboring gene zinc finger protein 877, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:21272495-21272995 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12715 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17624 Neighboring gene 5'-3' exoribonuclease 2 Neighboring gene NK2 homeobox 4 Neighboring gene Sharpr-MPRA regulatory region 14823 Neighboring gene RN7SK pseudogene 140 Neighboring gene hydroxysteroid 17-beta dehydrogenase 12 pseudogene Neighboring gene translation initiation factor IF-2 Neighboring gene glutathione S-transferase mu 3 pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      21396863..21441456
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_937329.4 RNA Sequence

    2. XR_937330.4 RNA Sequence

    3. XR_001754527.3 RNA Sequence

    4. XR_937325.4 RNA Sequence

      Related
      ENST00000660673.1

    5. XR_001754528.1 RNA Sequence

    6. XR_001754530.1 RNA Sequence

    7. XR_001754526.1 RNA Sequence

    8. XR_007067725.1 RNA Sequence

    9. XR_001754531.3 RNA Sequence

    10. XR_001754532.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      21453521..21498110
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007089461.1 RNA Sequence

    2. XR_007089462.1 RNA Sequence

    3. XR_007089457.1 RNA Sequence

    4. XR_007089454.1 RNA Sequence

    5. XR_007089458.1 RNA Sequence

    6. XR_007089460.1 RNA Sequence

    7. XR_007089453.1 RNA Sequence

    8. XR_007089456.1 RNA Sequence

    9. XR_007089455.1 RNA Sequence

    10. XR_007089459.1 RNA Sequence

    11. XR_007089463.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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