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    LOC105225322 host cell factor [ Bactrocera dorsalis (oriental fruit fly) ]

    Gene ID: 105225322, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC105225322
    Gene description
    host cell factor
    See related
    EnsemblRapid:LOC105225322
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bactrocera dorsalis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Bactrocera; Bactrocera
    Also known as
    Hcf
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    Genomic context

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    See LOC105225322 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    103 current ASM2337382v1 (GCF_023373825.1) 6 NC_064308.1 (36291694..36354492, complement)
    102 previous assembly ASM78921v2 (GCF_000789215.1) Unplaced Scaffold NW_011875640.1 (17173..27860)

    Chromosome 6 - NC_064308.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125779336 Neighboring gene uncharacterized LOC125779534 Neighboring gene uncharacterized LOC125779498 Neighboring gene uncharacterized LOC125779761 Neighboring gene putative nuclease HARBI1 Neighboring gene small nucleolar RNA U3 Neighboring gene uncharacterized LOC125779543

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RNA sequencing to characterize transcriptional changes of sexual maturation and mating in the female oriental fruit fly Bactrocera dorsalis. Zheng W, et al. BMC Genomics, 2016 Mar 5. PMID 26946038, Free PMC Article
    2. Characterizing the developmental transcriptome of the oriental fruit fly, Bactrocera dorsalis (Diptera: Tephritidae) through comparative genomic analysis with Drosophila melanogaster utilizing modENCODE datasets. Geib SM, et al. BMC Genomics, 2014 Oct 28. PMID 25348373, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone methyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    host cell factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Bactrocera dorsalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2337382v1 Primary Assembly

    Genomic

    1. NC_064308.1 Reference ASM2337382v1 Primary Assembly

      Range
      36291694..36354492 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_049460198.1 → XP_049316155.1  host cell factor isoform X1

      UniProtKB/TrEMBL
      A0A6I9V2R3
      Related
      XP_049316155.1, XM_049460198.1

    2. XM_049460200.1 → XP_049316157.1  host cell factor isoform X1

      UniProtKB/TrEMBL
      A0A6I9V2R3
      Related
      XP_049316157.1, XM_049460200.1

    3. XM_049460202.1 → XP_049316159.1  host cell factor isoform X2

      UniProtKB/TrEMBL
      A0A034WWZ2
      Related
      XP_049316159.1, XM_049460202.1

    4. XM_049460201.1 → XP_049316158.1  host cell factor isoform X2

      UniProtKB/TrEMBL
      A0A034WWZ2
      Related
      XP_049316158.1, XM_049460201.1

    5. XM_049460199.1 → XP_049316156.1  host cell factor isoform X1

      UniProtKB/TrEMBL
      A0A6I9V2R3
      Related
      XP_049316156.1, XM_049460199.1

    6. XM_049460194.1 → XP_049316151.1  host cell factor isoform X1

      UniProtKB/TrEMBL
      A0A6I9V2R3
      Related
      XP_049316151.1, XM_049460194.1

    7. XM_049460195.1 → XP_049316152.1  host cell factor isoform X1

      UniProtKB/TrEMBL
      A0A6I9V2R3
      Related
      XP_049316152.1, XM_049460195.1

    8. XM_049460196.1 → XP_049316153.1  host cell factor isoform X1

      UniProtKB/TrEMBL
      A0A6I9V2R3
      Related
      XP_049316153.1, XM_049460196.1

    9. XM_049460197.1 → XP_049316154.1  host cell factor isoform X1

      UniProtKB/TrEMBL
      A0A6I9V2R3
      Related
      XP_049316154.1, XM_049460197.1

    RNA

    1. XR_007423225.1 RNA Sequence

      Related
      XR_007423225.1

    2. XR_007423226.1 RNA Sequence

      Related
      XR_007423226.1

    3. XR_007423224.1 RNA Sequence

      Related
      XR_007423224.1
    Nucleotide Protein
    Heading Accession and Version

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