U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC105210722 transformer-2 sex-determining protein [ Zeugodacus cucurbitae (melon fly) ]

    Gene ID: 105210722, updated on 10-May-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC105210722
    Gene description
    transformer-2 sex-determining protein
    See related
    EnsemblRapid:LOC105210722
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zeugodacus cucurbitae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Zeugodacus; Zeugodacus
    Also known as
    tra2_1; tra2_2
    Orthologs
    fruit fly all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC105210722 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_03 current idZeuCucr1.2 (GCF_028554725.1) 6 NC_071671.1 (23968407..23971306)
    101 previous assembly ASM80634v1 (GCF_000806345.1) Unplaced Scaffold NW_011863687.1 (1227184..1230842, complement)

    Chromosome 6 - NC_071671.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105210726 Neighboring gene Acyl-CoA synthetase long-chain Neighboring gene uncharacterized LOC128922472 Neighboring gene WAS/WASL-interacting protein family member 1 Neighboring gene biogenesis of lysosome-related organelles complex 1 subunit 1 Neighboring gene uncharacterized LOC105210719

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Reconstructing a comprehensive transcriptome assembly of a white-pupal translocated strain of the pest fruit fly Bactrocera cucurbitae. Sim SB, et al. Gigascience, 2015. PMID 25830018, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    transformer-2 sex-determining protein
    Names
    transformer 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_028554725.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idZeuCucr1.2 Primary Assembly

    Genomic

    1. NC_071671.1 Reference idZeuCucr1.2 Primary Assembly

      Range
      23968407..23971306
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011181845.3 → XP_011180147.1  transformer-2 sex-determining protein isoform X1

      UniProtKB/TrEMBL
      A0A0A1XI74
      Related
      XP_011180147.1, XM_011181845.3
      Conserved Domains (2) summary
      COG0724
      Location:98 → 185
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12363
      Location:109 → 186
      RRM_TRA2; RNA recognition motif in transformer-2 protein homolog TRA2-alpha, TRA2-beta and similar proteins

    2. XM_011181847.3 → XP_011180149.1  transformer-2 sex-determining protein isoform X3

      UniProtKB/TrEMBL
      A0A0A1XGQ8, A0A0M4MWX8
      Related
      XP_011180149.1, XM_011181847.3
      Conserved Domains (2) summary
      COG0724
      Location:95 → 180
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12363
      Location:104 → 181
      RRM_TRA2; RNA recognition motif in transformer-2 protein homolog TRA2-alpha, TRA2-beta and similar proteins

    3. XM_011181846.3 → XP_011180148.1  transformer-2 sex-determining protein isoform X2

      UniProtKB/TrEMBL
      A0A0A1XI74
      Related
      XP_011180148.1, XM_011181846.3
      Conserved Domains (2) summary
      COG0724
      Location:94 → 181
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12363
      Location:105 → 182
      RRM_TRA2; RNA recognition motif in transformer-2 protein homolog TRA2-alpha, TRA2-beta and similar proteins
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases