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    LOC105178121 ubiquitin carboxyl-terminal hydrolase 26 [ Sesamum indicum (sesame) ]

    Gene ID: 105178121, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC105178121
    Gene description
    ubiquitin carboxyl-terminal hydrolase 26
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sesamum indicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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    Genomic context

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    See LOC105178121 in Genome Data Viewer
    Location:
    chromosome: LG15
    Exon count:
    16
    Annotation release Status Assembly LG Location
    101 current S_indicum_v1.0 (GCF_000512975.1) LG15 NC_026159.1 (6940107..6955739)

    Linkage Group LG15 - NC_026159.1Genomic Context describing neighboring genes Neighboring gene RING-H2 finger protein ATL78 Neighboring gene autophagy-related protein 13b Neighboring gene translation initiation factor eIF-2B subunit epsilon Neighboring gene actin-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_026159.1 Chromosome LG15 Reference S_indicum_v1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. Wei W, et al. BMC Genomics, 2011 Sep 19. PMID 21929789, Free PMC Article
    2. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin carboxyl-terminal hydrolase 26

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference S_indicum_v1.0 Primary Assembly

    Genomic

    1. NC_026159.1 Reference S_indicum_v1.0 Primary Assembly

      Range
      6940107..6955739
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020699093.1 → XP_020554752.1  ubiquitin carboxyl-terminal hydrolase 26 isoform X2

      UniProtKB/TrEMBL
      A0A8M8V851
      Conserved Domains (2) summary
      cd02668
      Location:110 → 456
      Peptidase_C19L; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam06337
      Location:656 → 716
      DUSP; DUSP domain

    2. XM_011101494.2 → XP_011099796.1  ubiquitin carboxyl-terminal hydrolase 26 isoform X1

      See identical proteins and their annotated locations for XP_011099796.1

      UniProtKB/TrEMBL
      A0A6I9UHT0
      Conserved Domains (5) summary
      cd02668
      Location:110 → 456
      Peptidase_C19L; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam00443
      Location:108 → 385
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam06337
      Location:656 → 716
      DUSP; DUSP domain
      cl00155
      Location:988 → 1046
      UBQ; Ubiquitin-like proteins
      cl12116
      Location:541 → 607
      DUSP; DUSP domain

    3. XM_011101493.2 → XP_011099795.1  ubiquitin carboxyl-terminal hydrolase 26 isoform X1

      See identical proteins and their annotated locations for XP_011099795.1

      UniProtKB/TrEMBL
      A0A6I9UHT0
      Conserved Domains (5) summary
      cd02668
      Location:110 → 456
      Peptidase_C19L; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
      pfam00443
      Location:108 → 385
      UCH; Ubiquitin carboxyl-terminal hydrolase
      pfam06337
      Location:656 → 716
      DUSP; DUSP domain
      cl00155
      Location:988 → 1046
      UBQ; Ubiquitin-like proteins
      cl12116
      Location:541 → 607
      DUSP; DUSP domain
    Nucleotide Protein
    Heading Accession and Version

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