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    LOC105167840 cellulose synthase A catalytic subunit 8 [UDP-forming] [ Sesamum indicum (sesame) ]

    Gene ID: 105167840, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC105167840
    Gene description
    cellulose synthase A catalytic subunit 8 [UDP-forming]
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sesamum indicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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    Genomic context

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    See LOC105167840 in Genome Data Viewer
    Location:
    chromosome: LG8
    Exon count:
    13
    Annotation release Status Assembly LG Location
    101 current S_indicum_v1.0 (GCF_000512975.1) LG8 NC_026152.1 (7731525..7737267)

    Linkage Group LG8 - NC_026152.1Genomic Context describing neighboring genes Neighboring gene expansin-B3-like Neighboring gene clathrin light chain 1 Neighboring gene uncharacterized LOC105167841 Neighboring gene uncharacterized LOC105167842

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_026152.1 Chromosome LG8 Reference S_indicum_v1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the sesame (Sesamum indicum L.) global transcriptome using Illumina paired-end sequencing and development of EST-SSR markers. Wei W, et al. BMC Genomics, 2011 Sep 19. PMID 21929789, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cellulose synthase (UDP-forming) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellulose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plant-type primary cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cellulose synthase A catalytic subunit 8 [UDP-forming]

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference S_indicum_v1.0 Primary Assembly

    Genomic

    1. NC_026152.1 Reference S_indicum_v1.0 Primary Assembly

      Range
      7731525..7737267
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011087670.2 → XP_011085972.1  cellulose synthase A catalytic subunit 8 [UDP-forming]

      UniProtKB/TrEMBL
      A0A6I9TN69
      Conserved Domains (3) summary
      PLN02195
      Location:1 → 982
      PLN02195; cellulose synthase A
      cl11394
      Location:423 → 730
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
      cl17238
      Location:8 → 58
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    Nucleotide Protein
    Heading Accession and Version

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