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    LOC105157978 paramyosin [ Sesamum indicum (sesame) ]

    Gene ID: 105157978, updated on 4-Nov-2022

    Summary

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    Gene symbol
    LOC105157978
    Gene description
    paramyosin
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sesamum indicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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    Genomic context

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    See LOC105157978 in Genome Data Viewer
    Location:
    chromosome: LG3
    Exon count:
    8
    Annotation release Status Assembly LG Location
    101 current S_indicum_v1.0 (GCF_000512975.1) LG3 NC_026147.1 (10493965..10498957)

    Linkage Group LG3 - NC_026147.1Genomic Context describing neighboring genes Neighboring gene UDP-glycosyltransferase 83A1-like Neighboring gene protein Asterix Neighboring gene SNAP25 homologous protein SNAP33 Neighboring gene uncharacterized LOC110011775

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_026147.1 Chromosome LG3 Reference S_indicum_v1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Development and validation of genic-SSR markers in sesame by RNA-seq. Zhang H, et al. BMC Genomics, 2012 Jul 16. PMID 22800194, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    paramyosin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sesamum indicum Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference S_indicum_v1.0 Primary Assembly

    Genomic

    1. NC_026147.1 Reference S_indicum_v1.0 Primary Assembly

      Range
      10493965..10498957
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020693068.1 → XP_020548727.1  paramyosin isoform X1

      UniProtKB/TrEMBL
      A0A6I9SU09
      Conserved Domains (1) summary
      cl25732
      Location:21 → 246
      SMC_N; RecF/RecN/SMC N terminal domain

    2. XM_011074556.2 → XP_011072858.1  paramyosin isoform X1

      See identical proteins and their annotated locations for XP_011072858.1

      UniProtKB/TrEMBL
      A0A6I9SU09
      Conserved Domains (1) summary
      cl25732
      Location:21 → 246
      SMC_N; RecF/RecN/SMC N terminal domain

    3. XM_011074557.2 → XP_011072859.1  paramyosin isoform X1

      See identical proteins and their annotated locations for XP_011072859.1

      UniProtKB/TrEMBL
      A0A6I9SU09
      Conserved Domains (1) summary
      cl25732
      Location:21 → 246
      SMC_N; RecF/RecN/SMC N terminal domain

    4. XM_020693069.1 → XP_020548728.1  paramyosin isoform X1

      UniProtKB/TrEMBL
      A0A6I9SU09
      Conserved Domains (1) summary
      cl25732
      Location:21 → 246
      SMC_N; RecF/RecN/SMC N terminal domain

    5. XM_011074554.2 → XP_011072856.1  paramyosin isoform X1

      See identical proteins and their annotated locations for XP_011072856.1

      UniProtKB/TrEMBL
      A0A6I9SU09
      Conserved Domains (1) summary
      cl25732
      Location:21 → 246
      SMC_N; RecF/RecN/SMC N terminal domain

    6. XM_020693070.1 → XP_020548729.1  paramyosin isoform X1

      UniProtKB/TrEMBL
      A0A6I9SU09
      Conserved Domains (1) summary
      cl25732
      Location:21 → 246
      SMC_N; RecF/RecN/SMC N terminal domain

    7. XM_011074553.2 → XP_011072855.1  paramyosin isoform X1

      See identical proteins and their annotated locations for XP_011072855.1

      UniProtKB/TrEMBL
      A0A6I9SU09
      Conserved Domains (1) summary
      cl25732
      Location:21 → 246
      SMC_N; RecF/RecN/SMC N terminal domain

    8. XM_011074555.2 → XP_011072857.1  paramyosin isoform X1

      See identical proteins and their annotated locations for XP_011072857.1

      UniProtKB/TrEMBL
      A0A6I9SU09
      Conserved Domains (1) summary
      cl25732
      Location:21 → 246
      SMC_N; RecF/RecN/SMC N terminal domain

    9. XM_020693071.1 → XP_020548730.1  paramyosin isoform X2

      UniProtKB/TrEMBL
      A0A8M8UXJ5
      Conserved Domains (1) summary
      cl25732
      Location:21 → 368
      SMC_N; RecF/RecN/SMC N terminal domain

    10. XM_020693072.1 → XP_020548731.1  paramyosin isoform X3

      UniProtKB/TrEMBL
      A0A8M8UXU3
      Conserved Domains (1) summary
      cl25732
      Location:5 → 258
      SMC_N; RecF/RecN/SMC N terminal domain
    Nucleotide Protein
    Heading Accession and Version

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