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    LOC105137348 cysteine proteinase inhibitor 6-like [ Populus euphratica (Euphrates poplar) ]

    Gene ID: 105137348, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC105137348
    Gene description
    cysteine proteinase inhibitor 6-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus euphratica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC105137348 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    100 current PopEup_1.0 (GCF_000495115.1) Unplaced Scaffold NW_011499944.1 (474327..476468)

    NW_011499944.1Genomic Context describing neighboring genes Neighboring gene aladin Neighboring gene protein kinase and PP2C-like domain-containing protein Neighboring gene cytochrome P450 98A2-like Neighboring gene cytochrome P450 98A2-like Neighboring gene uncharacterized LOC105137344

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_011499944.1 Unplaced Scaffold Reference PopEup_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type endopeptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cysteine proteinase inhibitor 6-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus euphratica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PopEup_1.0 Primary Assembly

    Genomic

    1. NW_011499944.1 Reference PopEup_1.0 Primary Assembly

      Range
      474327..476468
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011043069.1 → XP_011041371.1  cysteine proteinase inhibitor 6-like

      UniProtKB/TrEMBL
      A0AAJ6V5Q0
      Conserved Domains (2) summary
      smart00043
      Location:36 → 124
      CY; Cystatin-like domain
      cl09238
      Location:142 → 186
      CY; Cystatin-like domain; Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains.
    Nucleotide Protein
    Heading Accession and Version

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