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    LOC105131957 scarecrow-like protein 22 [ Populus euphratica (Euphrates poplar) ]

    Gene ID: 105131957, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC105131957
    Gene description
    scarecrow-like protein 22
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus euphratica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC105131957 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    100 current PopEup_1.0 (GCF_000495115.1) Unplaced Scaffold NW_011499846.1 (3142105..3145277, complement)

    NW_011499846.1Genomic Context describing neighboring genes Neighboring gene spindle and kinetochore-associated protein 1 homolog Neighboring gene uncharacterized LOC105131947 Neighboring gene autophagy-related protein 8f-like Neighboring gene uncharacterized LOC105131974 Neighboring gene uncharacterized LOC105131996

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_011499846.1 Unplaced Scaffold Reference PopEup_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression profiles of precursor and mature microRNAs under dehydration and high salinity shock in Populus euphratica. Qin Y, et al. Plant Cell Rep, 2011 Oct. PMID 21706230
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    scarecrow-like protein 22
    Names
    GRAS transcription factor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus euphratica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PopEup_1.0 Primary Assembly

    Genomic

    1. NW_011499846.1 Reference PopEup_1.0 Primary Assembly

      Range
      3142105..3145277 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011035203.1 → XP_011033505.1  scarecrow-like protein 22 isoform X2

      UniProtKB/TrEMBL
      A0AAJ6UQ14
      Conserved Domains (1) summary
      pfam03514
      Location:343 → 694
      GRAS; GRAS domain family

    2. XM_011035194.1 → XP_011033496.1  scarecrow-like protein 22 isoform X1

      See identical proteins and their annotated locations for XP_011033496.1

      UniProtKB/TrEMBL
      A0AAJ6UQN1
      Conserved Domains (1) summary
      pfam03514
      Location:349 → 700
      GRAS; GRAS domain family

    3. XM_011035187.1 → XP_011033489.1  scarecrow-like protein 22 isoform X1

      See identical proteins and their annotated locations for XP_011033489.1

      UniProtKB/TrEMBL
      A0AAJ6UQN1
      Conserved Domains (1) summary
      pfam03514
      Location:349 → 700
      GRAS; GRAS domain family
    Nucleotide Protein
    Heading Accession and Version

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