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    LOC105112853 chloride channel protein CLC-f [ Populus euphratica (Euphrates poplar) ]

    Gene ID: 105112853, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC105112853
    Gene description
    chloride channel protein CLC-f
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Populus euphratica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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    Genomic context

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    See LOC105112853 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    100 current PopEup_1.0 (GCF_000495115.1) Unplaced Scaffold NW_011500262.1 (92778..98997)

    NW_011500262.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase BRI1-like 1 Neighboring gene probable WRKY transcription factor 2 Neighboring gene uncharacterized protein At4g26450-like Neighboring gene uncharacterized LOC105112855

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_011500262.1 Unplaced Scaffold Reference PopEup_1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables voltage-gated chloride channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chloride transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chloride channel protein CLC-f

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Populus euphratica Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference PopEup_1.0 Primary Assembly

    Genomic

    1. NW_011500262.1 Reference PopEup_1.0 Primary Assembly

      Range
      92778..98997
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011008729.1 → XP_011007031.1  chloride channel protein CLC-f isoform X1

      UniProtKB/TrEMBL
      A0AAJ6TA53
      Conserved Domains (4) summary
      COG0517
      Location:609 → 752
      CBS; CBS domain [Signal transduction mechanisms]
      cd00400
      Location:158 → 561
      Voltage_gated_ClC; CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This ...
      pfam00654
      Location:207 → 564
      Voltage_CLC; Voltage gated chloride channel
      cl15354
      Location:615 → 747
      CBS_pair; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...

    2. XM_011008730.1 → XP_011007032.1  chloride channel protein CLC-f isoform X2

      UniProtKB/TrEMBL
      A0AAJ6T945
      Conserved Domains (4) summary
      COG0517
      Location:609 → 750
      CBS; CBS domain [Signal transduction mechanisms]
      cd00400
      Location:158 → 561
      Voltage_gated_ClC; CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This ...
      pfam00654
      Location:207 → 564
      Voltage_CLC; Voltage gated chloride channel
      cl15354
      Location:615 → 745
      CBS_pair; The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called ...
    Nucleotide Protein
    Heading Accession and Version

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