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    LOC105029954 pre-mRNA-processing factor 19 [ Esox lucius (northern pike) ]

    Gene ID: 105029954, updated on 18-Jun-2024

    Summary

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    Gene symbol
    LOC105029954
    Gene description
    pre-mRNA-processing factor 19
    See related
    Ensembl:ENSELUG00000004578
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Esox lucius
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
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    Genomic context

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    See LOC105029954 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    104 current fEsoLuc1.pri (GCF_011004845.1) 4 NC_047572.1 (33686406..33690694)
    103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG04 NC_025971.4 (1252957..1257249, complement)

    Chromosome 4 - NC_047572.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2 D2 Neighboring gene uncharacterized LOC105029934 Neighboring gene V-type proton ATPase 116 kDa subunit a Neighboring gene mitochondrial ribosomal protein L18

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Prp19 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type catalytic step 1 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pre-mRNA-processing factor 19

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fEsoLuc1.pri Primary Assembly

    Genomic

    1. NC_047572.1 Reference fEsoLuc1.pri Primary Assembly

      Range
      33686406..33690694
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010903553.3 → XP_010901855.1  pre-mRNA-processing factor 19

      UniProtKB/TrEMBL
      A0A3P8ZHH9, A0A6Q2WSE7
      Related
      ENSELUP00000043741.1, ENSELUT00000059067.2
      Conserved Domains (5) summary
      smart00504
      Location:2 → 60
      Ubox; Modified RING finger domain
      COG2319
      Location:204 → 474
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:224 → 504
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam08606
      Location:69 → 132
      Prp19; Prp19/Pso4-like
      sd00039
      Location:225 → 263
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases