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    p3h2 prolyl 3-hydroxylase 2 [ Esox lucius (northern pike) ]

    Gene ID: 105007738, updated on 18-Jun-2024

    Summary

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    Gene symbol
    p3h2
    Gene description
    prolyl 3-hydroxylase 2
    See related
    Ensembl:ENSELUG00000014629
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Esox lucius
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
    Orthologs
    human zebrafish all
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    Genomic context

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    See p3h2 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    104 current fEsoLuc1.pri (GCF_011004845.1) 8 NC_047576.1 (1518778..1593943, complement)
    103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG08 NC_025975.4 (1509428..1583135, complement)

    Chromosome 8 - NC_047576.1Genomic Context describing neighboring genes Neighboring gene coproporphyrinogen oxidase Neighboring gene coiled-coil domain containing 181 Neighboring gene claudin-1 Neighboring gene coiled-coil domain containing 50a Neighboring gene urotensin 2 domain containing

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome and linkage map of the northern pike (Esox lucius): conserved synteny revealed between the salmonid sister group and the Neoteleostei. Rondeau EB, et al. PLoS One, 2014. PMID 25069045, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-ascorbic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables procollagen-proline 3-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in collagen metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prolyl 3-hydroxylase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fEsoLuc1.pri Primary Assembly

    Genomic

    1. NC_047576.1 Reference fEsoLuc1.pri Primary Assembly

      Range
      1518778..1593943 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029121639.2 → XP_028977472.1  prolyl 3-hydroxylase 2

      UniProtKB/TrEMBL
      A0A6Q2WTS6, A0A6Q2ZQE0
      Related
      ENSELUP00000080071.1, ENSELUT00000085885.2
      Conserved Domains (1) summary
      smart00702
      Location:447 → 643
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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