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    LOC104880500 uncharacterized LOC104880500 [ Vitis vinifera (wine grape) ]

    Gene ID: 104880500, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC104880500
    Gene description
    uncharacterized LOC104880500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC104880500 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 10 NC_081814.1 (9704993..9709460, complement)
    102 previous assembly 12X (GCF_000003745.3) 10 NC_012016.3 (4627558..4632058, complement)

    Chromosome 10 - NC_081814.1Genomic Context describing neighboring genes Neighboring gene membrane protein PM19L Neighboring gene uncharacterized LOC104880499 Neighboring gene pentatricopeptide repeat-containing protein At5g46460, mitochondrial Neighboring gene large ribosomal subunit protein eL32z Neighboring gene small nucleolar RNA Z196/R39/R59 family Neighboring gene small nucleolar RNA Z195/SNORD33/SNORD32 family

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC104880500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081814.1 Reference ASM3070453v1 Primary Assembly

      Range
      9704993..9709460 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010657317.3 → XP_010655619.1  uncharacterized protein LOC104880500

      UniProtKB/TrEMBL
      A5BD12
      Conserved Domains (3) summary
      smart00575
      Location:738 → 764
      ZnF_PMZ; plant mutator transposase zinc finger
      pfam03108
      Location:267 → 330
      DBD_Tnp_Mut; MuDR family transposase
      pfam10551
      Location:471 → 566
      MULE; MULE transposase domain
    Nucleotide Protein
    Heading Accession and Version

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