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    LOC104879815 WAT1-related protein At2g39510 [ Vitis vinifera (wine grape) ]

    Gene ID: 104879815, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC104879815
    Gene description
    WAT1-related protein At2g39510
    Locus tag
    VIT_00028302001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC104879815 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 7 NC_081811.1 (6290261..6292965)
    102 previous assembly 12X (GCF_000003745.3) 7 NC_012013.3 (5910678..5914030)

    Chromosome 7 - NC_081811.1Genomic Context describing neighboring genes Neighboring gene 1-aminocyclopropane-1-carboxylate oxidase homolog 1 Neighboring gene transcription factor EMB1444 Neighboring gene CDT1-like protein a, chloroplastic Neighboring gene autophagy-related protein 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WAT1-related protein At2g39510

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081811.1 Reference ASM3070453v1 Primary Assembly

      Range
      6290261..6292965
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010654059.3 → XP_010652361.1  WAT1-related protein At2g39510

      See identical proteins and their annotated locations for XP_010652361.1

      UniProtKB/TrEMBL
      A0A438KD36, D7U2X7
      Conserved Domains (2) summary
      COG0697
      Location:19 → 335
      RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]
      pfam00892
      Location:191 → 331
      EamA; EamA-like transporter family
    Nucleotide Protein
    Heading Accession and Version

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