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    Pomgnt1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) [ Fukomys damarensis (Damara mole-rat) ]

    Gene ID: 104852493, updated on 12-Mar-2024

    Summary

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    Gene symbol
    Pomgnt1
    Gene description
    protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)
    See related
    Ensembl:ENSFDAG00000008619
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Fukomys damarensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
    Orthologs
    human mouse all
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    Genomic context

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    See Pomgnt1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900935.1 (25798052..25807733, complement)
    101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011047126.1 (1751055..1764806, complement)

    NW_022900935.1Genomic Context describing neighboring genes Neighboring gene tetraspanin 1 Neighboring gene uncharacterized LOC117287342 Neighboring gene PIK3R3 upstream open reading frame Neighboring gene leucine rich adaptor protein 1 Neighboring gene RAD54 like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in O-glycan processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
    Names
    Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference DMR_v1.0_HiC Primary Assembly

    Genomic

    1. NW_022900935.1 Reference DMR_v1.0_HiC Primary Assembly

      Range
      25798052..25807733 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010610193.2 → XP_010608495.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X1

      See identical proteins and their annotated locations for XP_010608495.1

      UniProtKB/TrEMBL
      A0A091CTJ5
      Related
      ENSFDAP00000020192.1, ENSFDAT00000012094.1
      Conserved Domains (2) summary
      cd02514
      Location:301 → 628
      GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
      cd13937
      Location:99 → 246
      PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases

    2. XM_010610196.3 → XP_010608498.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X3

      Related
      ENSFDAP00000020198.1
      Conserved Domains (2) summary
      cd02514
      Location:279 → 606
      GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
      cd13937
      Location:77 → 224
      PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases

    3. XM_010610195.2 → XP_010608497.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 isoform X2

      Conserved Domains (2) summary
      cd13937
      Location:99 → 246
      PANDER_GnT-1_2_like; PANDER-like domain of N-acetylglucosaminyltransferases
      cl11394
      Location:301 → 593
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    Nucleotide Protein
    Heading Accession and Version

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