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    Cab-1D Chlorophyll a-b binding protein 1D [ Solanum lycopersicum (tomato) ]

    Gene ID: 104645883, updated on 1-Nov-2024

    Summary

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    Gene symbol
    Cab-1D
    Gene description
    Chlorophyll a-b binding protein 1D
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Solanum lycopersicum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
    Also known as
    LHCP; CAB1D
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    Genomic context

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    See Cab-1D in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 2 NC_090801.1 (56725401..56726351)
    103 previous assembly SL3.0 (GCF_000188115.4) 2 NC_015439.3 (41087491..41088441)

    Chromosome 2 - NC_090801.1Genomic Context describing neighboring genes Neighboring gene chlorophyll a/b-binding protein Cab-1A Neighboring gene chlorophyll a-b binding protein 1, chloroplastic Neighboring gene a/b-binding protein Cab-1C Neighboring gene chlorophyll a/b-binding protein Cab-1B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular characterization and genetic mapping of two clusters of genes encoding chlorophyll a/b-binding proteins in Lycopersicon esculentum (tomato). Pichersky E, et al. Gene, 1985. PMID 3007291
    2. Expressed sequence tags from the laboratory-grown miniature tomato (Lycopersicon esculentum) cultivar Micro-Tom and mining for single nucleotide polymorphisms and insertions/deletions in tomato cultivars. Yamamoto N, et al. Gene, 2005 Aug 15. PMID 15975739
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in photosynthesis, light harvesting in photosystem I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to light stimulus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast envelope IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in chloroplast thylakoid membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plastoglobule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chlorophyll a-b binding protein 1D
    Names
    LHCII type I CAB-1D
    cab 1d
    chlorophyll a/b binding protein
    chlorophyll a/b-binding protein Cab-1D

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001346777.1 → NP_001333706.1  chlorophyll a-b binding protein 1D

      Status: VALIDATED

      Source sequence(s)
      BP898533, BP898563, BP910187
      UniProtKB/TrEMBL
      K4B878

    RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SLM_r2.1 Primary Assembly

    Genomic

    1. NC_090801.1 Reference SLM_r2.1 Primary Assembly

      Range
      56725401..56726351
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P10707.1 GenPept UniProtKB/Swiss-Prot:P10707

    Gene LinkOut

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    Molecular Biology Databases