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    LOC104426042 auxin-responsive protein SAUR50 [ Eucalyptus grandis ]

    Gene ID: 104426042, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC104426042
    Gene description
    auxin-responsive protein SAUR50
    Locus tag
    EUGRSUZ_K02555
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Eucalyptus grandis
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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    Genomic context

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    See LOC104426042 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current ASM1654582v1 (GCF_016545825.1) 11 NC_052622.1 (27397159..27397875, complement)
    101 previous assembly Egrandis1_0 (GCF_000612305.1) Unplaced Scaffold NW_010092448.1 (32802581..32803266)

    Chromosome 11 - NC_052622.1Genomic Context describing neighboring genes Neighboring gene kinesin-like protein KIN-5C Neighboring gene wall-associated receptor kinase-like 22 Neighboring gene aspartate--tRNA ligase 2, cytoplasmic-like Neighboring gene replication protein A 14 kDa subunit B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in response to auxin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    auxin-responsive protein SAUR50

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Eucalyptus grandis Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM1654582v1 Primary Assembly

    Genomic

    1. NC_052622.1 Reference ASM1654582v1 Primary Assembly

      Range
      27397159..27397875 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010038964.2 → XP_010037266.2  auxin-responsive protein SAUR50

      UniProtKB/TrEMBL
      A0A059A5M7
      Conserved Domains (1) summary
      pfam02519
      Location:17 → 119
      Auxin_inducible; Auxin responsive protein
    Nucleotide Protein
    Heading Accession and Version

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