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    LOC103871144 squamosa promoter-binding-like protein 4 [ Brassica rapa (field mustard) ]

    Gene ID: 103871144, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103871144
    Gene description
    squamosa promoter-binding-like protein 4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103871144 in Genome Data Viewer
    Location:
    chromosome: A6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A06 NC_024800.2 (942220..943946, complement)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A6 NC_024800.1 (712651..714370, complement)

    Chromosome A06 - NC_024800.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117125850 Neighboring gene probable membrane-associated kinase regulator 1 Neighboring gene uncharacterized LOC117125849 Neighboring gene agamous-like MADS-box protein AGL18

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in flower development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    squamosa promoter-binding-like protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024800.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      942220..943946 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009149376.3 → XP_009147624.1  squamosa promoter-binding-like protein 4 isoform X2

      See identical proteins and their annotated locations for XP_009147624.1

      UniProtKB/TrEMBL
      A0A397YVS3, M4FEY4
      Conserved Domains (1) summary
      pfam03110
      Location:60 → 133
      SBP; SBP domain

    2. XM_009149374.3 → XP_009147622.2  squamosa promoter-binding-like protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A397YTG3
      Conserved Domains (1) summary
      pfam03110
      Location:60 → 133
      SBP; SBP domain

    RNA

    1. XR_633492.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases