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    LOC103868875 uncharacterized LOC103868875 [ Brassica rapa (field mustard) ]

    Gene ID: 103868875, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103868875
    Gene description
    uncharacterized LOC103868875
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103868875 in Genome Data Viewer
    Location:
    chromosome: A5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A05 NC_024799.2 (15517000..15522324)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A5 NC_024799.1 (13590799..13595963)

    Chromosome A05 - NC_024799.2Genomic Context describing neighboring genes Neighboring gene protein disulfide-isomerase 5-2 Neighboring gene uncharacterized LOC103868874 Neighboring gene uncharacterized LOC103868876 Neighboring gene uncharacterized LOC108871884

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type peptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC103868875

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024799.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      15517000..15522324
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009146932.1 → XP_009145180.1  uncharacterized protein LOC103868875

      UniProtKB/TrEMBL
      M4F016
      Conserved Domains (3) summary
      pfam06839
      Location:795 → 834
      zf-GRF; GRF zinc finger
      pfam09331
      Location:88 → 218
      DUF1985; Domain of unknown function (DUF1985)
      cl23802
      Location:675 → 799
      Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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