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    LOC103867521 protein OS-9 homolog [ Brassica rapa (field mustard) ]

    Gene ID: 103867521, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC103867521
    Gene description
    protein OS-9 homolog
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103867521 in Genome Data Viewer
    Location:
    chromosome: A5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A05 NC_024799.2 (6053142..6055037)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A5 NC_024799.1 (5756964..5758745)

    Chromosome A05 - NC_024799.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117134085 Neighboring gene putative nuclease HARBI1 Neighboring gene glutathione S-transferase T3-like Neighboring gene galactan beta-1,4-galactosyltransferase GALS1 Neighboring gene mitotic spindle checkpoint protein BUBR1 Neighboring gene transfer RNA threonine (anticodon AGU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum unfolded protein response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde protein transport, ER to cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum lumen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein OS-9 homolog
    Names
    endoplasmic reticulum lectin 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024799.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      6053142..6055037
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009145594.3 → XP_009143842.1  protein OS-9 homolog

      UniProtKB/TrEMBL
      A0A3P5Z3E0, M4CMP5
      Conserved Domains (1) summary
      pfam07915
      Location:120 → 193
      PRKCSH; Glucosidase II beta subunit-like protein
    Nucleotide Protein
    Heading Accession and Version

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