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    LOC103865946 LOB domain-containing protein 16 [ Brassica rapa (field mustard) ]

    Gene ID: 103865946, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103865946
    Gene description
    LOB domain-containing protein 16
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103865946 in Genome Data Viewer
    Location:
    chromosome: A4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A04 NC_024798.2 (20549089..20557515)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A4 NC_024798.1 (17794832..17796624)

    Chromosome A04 - NC_024798.2Genomic Context describing neighboring genes Neighboring gene RING-H2 finger protein ATL40 Neighboring gene transcription factor VOZ2 Neighboring gene zinc finger protein 11 Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene LOB domain-containing protein 17 Neighboring gene MATH domain and coiled-coil domain-containing protein At2g42465

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-Wide Identification and Characterization of BrrTCP Transcription Factors in Brassica rapa ssp. rapa. Du J, et al. Front Plant Sci, 2017. PMID 28955373, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in hormone-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOB domain-containing protein 16
    Names
    transcription factor LBD16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024798.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      20549089..20557515
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009143815.3 → XP_009142063.1  LOB domain-containing protein 16

      UniProtKB/TrEMBL
      A0A291LR02, A0A397ZPF7, M4DK49
      Conserved Domains (1) summary
      pfam03195
      Location:15 → 114
      DUF260; Protein of unknown function DUF260
    Nucleotide Protein
    Heading Accession and Version

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