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    LOC103863671 putative glucose-6-phosphate 1-epimerase [ Brassica rapa (field mustard) ]

    Gene ID: 103863671, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103863671
    Gene description
    putative glucose-6-phosphate 1-epimerase
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103863671 in Genome Data Viewer
    Location:
    chromosome: A1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A01 NC_024795.2 (8808959..8811326)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A1 NC_024795.1 (8516838..8519134)

    Chromosome A01 - NC_024795.2Genomic Context describing neighboring genes Neighboring gene pumilio homolog 6, chloroplastic Neighboring gene HEAT repeat-containing protein 6 Neighboring gene putative glucose-6-phosphate 1-epimerase Neighboring gene nifU-like protein 3, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Activation of defense responses in Chinese cabbage by a nonhost pathogen, Pseudomonas syringae pv. tomato. Park YS, et al. J Biochem Mol Biol, 2005 Nov 30. PMID 16336791
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative glucose-6-phosphate 1-epimerase
    Names
    apospory-associated-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024795.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      8808959..8811326
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009141431.3 → XP_009139679.1  putative glucose-6-phosphate 1-epimerase

      See identical proteins and their annotated locations for XP_009139679.1

      UniProtKB/TrEMBL
      A0A398APM5, A0A3P5ZR45, M4DBS1
      Conserved Domains (1) summary
      cd09020
      Location:40 → 308
      D-hex-6-P-epi_like; D-hexose-6-phosphate epimerase-like

    2. XM_009141425.3 → XP_009139673.1  putative glucose-6-phosphate 1-epimerase

      See identical proteins and their annotated locations for XP_009139673.1

      UniProtKB/TrEMBL
      A0A398APM5, A0A3P5ZR45, M4DBS1
      Conserved Domains (1) summary
      cd09020
      Location:40 → 308
      D-hex-6-P-epi_like; D-hexose-6-phosphate epimerase-like
    Nucleotide Protein
    Heading Accession and Version

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