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    LOC103861226 subtilisin-like protease SBT3.1 [ Brassica rapa (field mustard) ]

    Gene ID: 103861226, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103861226
    Gene description
    subtilisin-like protease SBT3.1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103861226 in Genome Data Viewer
    Location:
    chromosome: A3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A03 NC_024797.2 (25268147..25271680)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A3 NC_024797.1 (24100124..24103486)

    Chromosome A03 - NC_024797.2Genomic Context describing neighboring genes Neighboring gene potassium transporter 9 Neighboring gene uncharacterized LOC103861223 Neighboring gene protein HEAT-STRESS-ASSOCIATED 32 Neighboring gene subtilisin-like protease SBT3.12 Neighboring gene uncharacterized LOC103861228

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    subtilisin-like protease SBT3.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024797.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      25268147..25271680
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009138937.3 → XP_009137185.1  subtilisin-like protease SBT3.1

      Conserved Domains (4) summary
      cd04852
      Location:139 → 590
      Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
      COG1404
      Location:242 → 388
      AprE; Serine protease, subtilisin family [Posttranslational modification, protein turnover, chaperones]
      cd02120
      Location:388 → 495
      PA_subtilisin_like; PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from ...
      pfam05922
      Location:62 → 129
      Inhibitor_I9; Peptidase inhibitor I9
    Nucleotide Protein
    Heading Accession and Version

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