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    LOC103855720 putative two-component response regulator ARR21 [ Brassica rapa (field mustard) ]

    Gene ID: 103855720, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103855720
    Gene description
    putative two-component response regulator ARR21
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103855720 in Genome Data Viewer
    Location:
    chromosome: A3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A03 NC_024797.2 (1280672..1285408)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A3 NC_024797.1 (1266575..1271033)

    Chromosome A03 - NC_024797.2Genomic Context describing neighboring genes Neighboring gene embryo-specific protein ATS3B Neighboring gene gibberellin 20 oxidase 3-like Neighboring gene protein IQ-DOMAIN 14 Neighboring gene RHOMBOID-like protein 3 Neighboring gene protein BONZAI 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytokinin-activated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphorelay signal transduction system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative two-component response regulator ARR21

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024797.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      1280672..1285408
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009132735.2 → XP_009130983.1  putative two-component response regulator ARR21

      UniProtKB/TrEMBL
      A0A397ZRE9, M4CNZ0
      Conserved Domains (2) summary
      TIGR01557
      Location:226 → 281
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      cl19078
      Location:18 → 136
      REC; phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs)
    Nucleotide Protein
    Heading Accession and Version

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