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    LOC103854906 protein TRANSPARENT TESTA 16-like [ Brassica rapa (field mustard) ]

    Gene ID: 103854906, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103854906
    Gene description
    protein TRANSPARENT TESTA 16-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103854906 in Genome Data Viewer
    Location:
    chromosome: A2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A02 NC_024796.2 (29545724..29548514, complement)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A2 NC_024796.1 (25611605..25614256, complement)

    Chromosome A02 - NC_024796.2Genomic Context describing neighboring genes Neighboring gene F-box/LRR-repeat protein 4-like Neighboring gene transcription factor TCP7 Neighboring gene nicotinamidase 2-like Neighboring gene serine carboxypeptidase-like 34

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein TRANSPARENT TESTA 16-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024796.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      29545724..29548514 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009131871.3 → XP_009130119.2  protein TRANSPARENT TESTA 16-like isoform X2

      UniProtKB/TrEMBL
      A0A3P6AST2

    2. XM_033284581.1 → XP_033140472.1  protein TRANSPARENT TESTA 16-like isoform X3

      UniProtKB/TrEMBL
      A0A3P6AST2, M4EKP8
      Conserved Domains (2) summary
      cd00265
      Location:2 → 79
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:81 → 171
      K-box; K-box region

    3. XM_033284580.1 → XP_033140471.1  protein TRANSPARENT TESTA 16-like isoform X3

      UniProtKB/TrEMBL
      A0A3P6AST2, M4EKP8
      Conserved Domains (2) summary
      cd00265
      Location:2 → 79
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:81 → 171
      K-box; K-box region

    4. XM_009131872.1 → XP_009130120.1  protein TRANSPARENT TESTA 16-like isoform X3

      See identical proteins and their annotated locations for XP_009130120.1

      UniProtKB/TrEMBL
      A0A3P6AST2, M4EKP8
      Conserved Domains (2) summary
      cd00265
      Location:2 → 79
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:81 → 171
      K-box; K-box region

    5. XM_009131870.1 → XP_009130118.1  protein TRANSPARENT TESTA 16-like isoform X1

      See identical proteins and their annotated locations for XP_009130118.1

      UniProtKB/TrEMBL
      A0A398AG41, A0A3P6AST2
      Conserved Domains (2) summary
      cd00265
      Location:18 → 95
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:98 → 185
      K-box; K-box region
    Nucleotide Protein
    Heading Accession and Version

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