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    LOC103853148 ubiquitin-conjugating enzyme E2 36 [ Brassica rapa (field mustard) ]

    Gene ID: 103853148, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103853148
    Gene description
    ubiquitin-conjugating enzyme E2 36
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103853148 in Genome Data Viewer
    Location:
    chromosome: A2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A02 NC_024796.2 (14865424..14887127)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A2 NC_024796.1 (15214034..15215595)

    Chromosome A02 - NC_024796.2Genomic Context describing neighboring genes Neighboring gene gamma-glutamyl hydrolase 1 Neighboring gene N-acylphosphatidylethanolamine synthase Neighboring gene BES1/BZR1 homolog protein 4 Neighboring gene alpha-1,3/1,6-mannosyltransferase ALG2 Neighboring gene uncharacterized LOC117125605 Neighboring gene putative wall-associated receptor kinase-like 16 Neighboring gene protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 Neighboring gene uncharacterized membrane protein At1g16860 Neighboring gene V-type proton ATPase catalytic subunit A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin conjugating enzyme activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in postreplication repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein K63-linked ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin-conjugating enzyme E2 36

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024796.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      14865424..14887127
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033284164.1 → XP_033140055.1  ubiquitin-conjugating enzyme E2 36

      UniProtKB/TrEMBL
      A0A397YUU7, A0A398AI70, M4CVY6
      Conserved Domains (1) summary
      cl00154
      Location:6 → 153
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    2. XM_033284165.1 → XP_033140056.1  ubiquitin-conjugating enzyme E2 36

      UniProtKB/TrEMBL
      A0A397YUU7, A0A398AI70, M4CVY6
      Conserved Domains (1) summary
      cl00154
      Location:6 → 153
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    3. XM_033284167.1 → XP_033140058.1  ubiquitin-conjugating enzyme E2 36

      UniProtKB/TrEMBL
      A0A397YUU7, A0A398AI70, M4CVY6
      Conserved Domains (1) summary
      cl00154
      Location:6 → 153
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    4. XM_033284166.1 → XP_033140057.1  ubiquitin-conjugating enzyme E2 36

      UniProtKB/TrEMBL
      A0A397YUU7, A0A398AI70, M4CVY6
      Conserved Domains (1) summary
      cl00154
      Location:6 → 153
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...

    5. XM_009130066.3 → XP_009128314.1  ubiquitin-conjugating enzyme E2 36

      UniProtKB/TrEMBL
      A0A397YUU7, A0A398AI70, M4CVY6
      Conserved Domains (1) summary
      cl00154
      Location:6 → 153
      UBCc; Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin ...
    Nucleotide Protein
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