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    LOC103853026 protein CUP-SHAPED COTYLEDON 3 [ Brassica rapa (field mustard) ]

    Gene ID: 103853026, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103853026
    Gene description
    protein CUP-SHAPED COTYLEDON 3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103853026 in Genome Data Viewer
    Location:
    chromosome: A2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A02 NC_024796.2 (13759977..13763807, complement)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A2 NC_024796.1 (14168404..14170451, complement)

    Chromosome A02 - NC_024796.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117132159 Neighboring gene RING-H2 finger protein ATL8 Neighboring gene probable inorganic phosphate transporter 1-9 Neighboring gene 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein CUP-SHAPED COTYLEDON 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024796.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      13759977..13763807 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009129929.3 → XP_009128177.1  protein CUP-SHAPED COTYLEDON 3

      UniProtKB/TrEMBL
      M4CVL2
      Conserved Domains (1) summary
      pfam02365
      Location:22 → 149
      NAM; No apical meristem (NAM) protein
    Nucleotide Protein
    Heading Accession and Version

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