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    LOC103849718 two-component response regulator-like APRR1 [ Brassica rapa (field mustard) ]

    Gene ID: 103849718, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103849718
    Gene description
    two-component response regulator-like APRR1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103849718 in Genome Data Viewer
    Location:
    chromosome: A1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A01 NC_024795.2 (26127269..26134424, complement)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) Unplaced Scaffold NW_008746734.1 (54876..56131)

    Chromosome A01 - NC_024795.2Genomic Context describing neighboring genes Neighboring gene transcription factor JUNGBRUNNEN 1 Neighboring gene scopoletin 8-hydroxylase Neighboring gene uncharacterized LOC108870588 Neighboring gene uncharacterized LOC103849716 Neighboring gene ABC transporter C family member 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of flower development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    two-component response regulator-like APRR1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024795.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      26127269..26134424 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009126436.3 → XP_009124684.1  two-component response regulator-like APRR1 isoform X4

      UniProtKB/TrEMBL
      A0A398ASN2, M4FE30
      Conserved Domains (1) summary
      pfam06203
      Location:137 → 180
      CCT; CCT motif

    2. XM_009126434.3 → XP_009124682.1  two-component response regulator-like APRR1 isoform X2

      See identical proteins and their annotated locations for XP_009124682.1

      UniProtKB/TrEMBL
      A0A398ASU0
      Conserved Domains (1) summary
      pfam06203
      Location:137 → 180
      CCT; CCT motif

    3. XM_009126435.3 → XP_009124683.1  two-component response regulator-like APRR1 isoform X3

      UniProtKB/TrEMBL
      A0A398ASN2
      Conserved Domains (1) summary
      pfam06203
      Location:138 → 181
      CCT; CCT motif

    4. XM_009126433.3 → XP_009124681.1  two-component response regulator-like APRR1 isoform X1

      UniProtKB/TrEMBL
      A0A398ASU0
      Conserved Domains (1) summary
      pfam06203
      Location:138 → 181
      CCT; CCT motif
    Nucleotide Protein
    Heading Accession and Version

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