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    LOC103849175 zinc finger protein CONSTANS-LIKE 9 [ Brassica rapa (field mustard) ]

    Gene ID: 103849175, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103849175
    Gene description
    zinc finger protein CONSTANS-LIKE 9
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103849175 in Genome Data Viewer
    Location:
    chromosome: A1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A01 NC_024795.2 (27759624..27762323, complement)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A1 NC_024795.1 (27914087..27916788, complement)

    Chromosome A01 - NC_024795.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117134113 Neighboring gene ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic Neighboring gene GBF-interacting protein 1 Neighboring gene probable glycosyltransferase At3g07620 Neighboring gene heavy metal-associated isoprenylated plant protein 16-like Neighboring gene small nuclear ribonucleoprotein SmD1a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein CONSTANS-LIKE 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024795.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      27759624..27762323 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009125984.3 → XP_009124232.1  zinc finger protein CONSTANS-LIKE 9

      See identical proteins and their annotated locations for XP_009124232.1

      UniProtKB/TrEMBL
      A0A398ATD7, A0A3P6A0V5, M4FFZ6
      Conserved Domains (3) summary
      cd19821
      Location:5 → 47
      Bbox1_BBX-like; B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins
      pfam06203
      Location:309 → 352
      CCT; CCT motif
      cl00034
      Location:47 → 73
      Bbox_SF; B-box-type zinc finger superfamily

    2. XM_009125992.3 → XP_009124240.1  zinc finger protein CONSTANS-LIKE 9

      See identical proteins and their annotated locations for XP_009124240.1

      UniProtKB/TrEMBL
      A0A398ATD7, A0A3P6A0V5, M4FFZ6
      Conserved Domains (3) summary
      cd19821
      Location:5 → 47
      Bbox1_BBX-like; B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins
      pfam06203
      Location:309 → 352
      CCT; CCT motif
      cl00034
      Location:47 → 73
      Bbox_SF; B-box-type zinc finger superfamily

    3. XM_033291210.1 → XP_033147101.1  zinc finger protein CONSTANS-LIKE 9

      UniProtKB/TrEMBL
      A0A398ATD7, A0A3P6A0V5, M4FFZ6
      Conserved Domains (3) summary
      cd19821
      Location:5 → 47
      Bbox1_BBX-like; B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins
      pfam06203
      Location:309 → 352
      CCT; CCT motif
      cl00034
      Location:47 → 73
      Bbox_SF; B-box-type zinc finger superfamily

    4. XM_033291205.1 → XP_033147096.1  zinc finger protein CONSTANS-LIKE 9

      UniProtKB/TrEMBL
      A0A398ATD7, A0A3P6A0V5, M4FFZ6
      Conserved Domains (3) summary
      cd19821
      Location:5 → 47
      Bbox1_BBX-like; B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins
      pfam06203
      Location:309 → 352
      CCT; CCT motif
      cl00034
      Location:47 → 73
      Bbox_SF; B-box-type zinc finger superfamily

    RNA

    1. XR_004458041.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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