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    LOC103843622 glutamate receptor 3.4 [ Brassica rapa (field mustard) ]

    Gene ID: 103843622, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103843622
    Gene description
    glutamate receptor 3.4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103843622 in Genome Data Viewer
    Location:
    chromosome: A9
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A09 NC_024803.2 (44276029..44280711, complement)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A9 NC_024803.1 (36281569..36285752, complement)

    Chromosome A09 - NC_024803.2Genomic Context describing neighboring genes Neighboring gene homeobox-leucine zipper protein HDG2 Neighboring gene uncharacterized LOC103843621 Neighboring gene 50S ribosomal protein L6, chloroplastic Neighboring gene NEDD8-activating enzyme E1 regulatory subunit AXR1-like Neighboring gene uncharacterized LOC108869705 Neighboring gene glycine-rich cell wall structural protein 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glutamate-gated receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glutamate receptor 3.4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024803.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      44276029..44280711 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009120367.3 → XP_009118615.1  glutamate receptor 3.4

      See identical proteins and their annotated locations for XP_009118615.1

      UniProtKB/TrEMBL
      A0A8D9D655
      Conserved Domains (3) summary
      cd19990
      Location:47 → 430
      PBP1_GABAb_receptor_plant; periplasmic ligand-binding domain of Arabidopsis thaliana glutamate receptors and its close homologs in other plants
      pfam00060
      Location:595 → 849
      Lig_chan; Ligand-gated ion channel
      cl21456
      Location:487 → 571
      Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily

    2. XM_033280740.1 → XP_033136631.1  glutamate receptor 3.4

      UniProtKB/TrEMBL
      A0A8D9D655
      Conserved Domains (3) summary
      cd19990
      Location:47 → 430
      PBP1_GABAb_receptor_plant; periplasmic ligand-binding domain of Arabidopsis thaliana glutamate receptors and its close homologs in other plants
      pfam00060
      Location:595 → 849
      Lig_chan; Ligand-gated ion channel
      cl21456
      Location:487 → 571
      Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily

    3. XM_009120366.3 → XP_009118614.1  glutamate receptor 3.4

      See identical proteins and their annotated locations for XP_009118614.1

      UniProtKB/TrEMBL
      A0A8D9D655
      Conserved Domains (3) summary
      cd19990
      Location:47 → 430
      PBP1_GABAb_receptor_plant; periplasmic ligand-binding domain of Arabidopsis thaliana glutamate receptors and its close homologs in other plants
      pfam00060
      Location:595 → 849
      Lig_chan; Ligand-gated ion channel
      cl21456
      Location:487 → 571
      Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
    Nucleotide Protein
    Heading Accession and Version

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