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    LOC103839272 probable receptor-like protein kinase At3g17420 [ Brassica rapa (field mustard) ]

    Gene ID: 103839272, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103839272
    Gene description
    probable receptor-like protein kinase At3g17420
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103839272 in Genome Data Viewer
    Location:
    chromosome: A1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A01 NC_024795.2 (24118596..24121839)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A1 NC_024795.1 (23108748..23111976)

    Chromosome A01 - NC_024795.2Genomic Context describing neighboring genes Neighboring gene novel plant SNARE 13 Neighboring gene probable sugar phosphate/phosphate translocator At3g17430 Neighboring gene receptor-like cytoplasmic kinase 1 Neighboring gene uncharacterized LOC103839292 Neighboring gene glutathione S-transferase T3-like Neighboring gene S-adenosylmethionine synthase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable receptor-like protein kinase At3g17420

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024795.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      24118596..24121839
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033285899.1 → XP_033141790.1  probable receptor-like protein kinase At3g17420 isoform X2

      UniProtKB/TrEMBL
      A0A3P5ZXC9
      Conserved Domains (1) summary
      cd14066
      Location:163 → 429
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    2. XM_009115782.3 → XP_009114030.1  probable receptor-like protein kinase At3g17420 isoform X1

      See identical proteins and their annotated locations for XP_009114030.1

      UniProtKB/TrEMBL
      A0A3P5ZXC9, M4DXJ9
      Conserved Domains (2) summary
      smart00219
      Location:158 → 428
      TyrKc; Tyrosine kinase, catalytic domain
      cd14066
      Location:163 → 429
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    3. XM_009115790.3 → XP_009114038.1  probable receptor-like protein kinase At3g17420 isoform X1

      See identical proteins and their annotated locations for XP_009114038.1

      UniProtKB/TrEMBL
      A0A3P5ZXC9, M4DXJ9
      Conserved Domains (2) summary
      smart00219
      Location:158 → 428
      TyrKc; Tyrosine kinase, catalytic domain
      cd14066
      Location:163 → 429
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    Nucleotide Protein
    Heading Accession and Version

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