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    LOC103837876 KH domain-containing protein HEN4 [ Brassica rapa (field mustard) ]

    Gene ID: 103837876, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC103837876
    Gene description
    KH domain-containing protein HEN4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica rapa
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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    Genomic context

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    See LOC103837876 in Genome Data Viewer
    Location:
    chromosome: A9
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    103.20201202 current CAAS_Brap_v3.01 (GCF_000309985.2) A09 NC_024803.2 (39606090..39609333, complement)
    101 previous assembly Brapa_1.0 (GCF_000309985.1) A9 NC_024803.1 (5004148..5006935, complement)

    Chromosome A09 - NC_024803.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108869889 Neighboring gene probable rhamnogalacturonate lyase B Neighboring gene kinesin-like protein KIN-14R Neighboring gene uncharacterized LOC103837874 Neighboring gene nicotinamidase 1 Neighboring gene transfer RNA alanine (anticodon CGC) Neighboring gene protein NETWORKED 2D

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    KH domain-containing protein HEN4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Brassica rapa Updated Annotation Release 103.20201202

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CAAS_Brap_v3.01 Primary Assembly

    Genomic

    1. NC_024803.2 Reference CAAS_Brap_v3.01 Primary Assembly

      Range
      39606090..39609333 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009114262.3 → XP_009112510.1  KH domain-containing protein HEN4

      UniProtKB/TrEMBL
      A0A3P5YS34, M4FBP2
      Conserved Domains (2) summary
      cd00105
      Location:570 → 632
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
      cd02396
      Location:300 → 369
      PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
    Nucleotide Protein
    Heading Accession and Version

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