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    TBX1 T-box transcription factor 1 [ Serinus canaria (Common canary) ]

    Gene ID: 103818277, updated on 12-Aug-2024

    Summary

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    Gene symbol
    TBX1
    Gene description
    T-box transcription factor 1
    See related
    EnsemblRapid:ENSSCAG00000004709
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Serinus canaria
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Fringillidae; Carduelinae; Serinus
    Orthologs
    human mouse all
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    Genomic context

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    See TBX1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_02 current serCan2020 (GCF_022539315.1) 15 NC_066329.1 (6578722..6592802)

    Chromosome 15 - NC_066329.1Genomic Context describing neighboring genes Neighboring gene septin 5 Neighboring gene glycoprotein Ib platelet subunit beta Neighboring gene G protein subunit beta 1 like Neighboring gene thioredoxin reductase 2 Neighboring gene catechol-O-methyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_066329.1 Chromosome 15 Reference serCan2020 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    T-box transcription factor TBX1
    Names
    T-box 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_022539315.1-RS_2023_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference serCan2020 Primary Assembly

    Genomic

    1. NC_066329.1 Reference serCan2020 Primary Assembly

      Range
      6578722..6592802
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_050980767.1 → XP_050836724.1  T-box transcription factor TBX1 isoform X1

    2. XM_050980769.1 → XP_050836726.1  T-box transcription factor TBX1 isoform X3

    3. XM_050980768.1 → XP_050836725.1  T-box transcription factor TBX1 isoform X2

      Related
      ENSSCAP00000005990.2, ENSSCAT00000006846.2
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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