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    Ubxn2b UBX domain protein 2B [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

    Gene ID: 103732273, updated on 11-Mar-2024

    Summary

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    Gene symbol
    Ubxn2b
    Gene description
    UBX domain protein 2B
    See related
    Ensembl:ENSNGAG00000014598
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nannospalax galili
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
    Orthologs
    human mouse all
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    Genomic context

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    See Ubxn2b in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008336027.1 (149343..191291, complement)

    NW_008336027.1Genomic Context describing neighboring genes Neighboring gene cholesterol 7-alpha-monooxygenase Neighboring gene KATNB1-like protein 1 pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene nucleophosmin pseudogene

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_008336027 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in membrane fusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nuclear membrane reassembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UBX domain-containing protein 2B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference S.galili_v1.0 Primary Assembly

    Genomic

    1. NW_008336027.1 Reference S.galili_v1.0 Primary Assembly

      Range
      149343..191291 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029562377.1 → XP_029418237.1  UBX domain-containing protein 2B isoform X2

      Conserved Domains (2) summary
      smart00553
      Location:113 → 204
      SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
      cl28922
      Location:222 → 303
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    2. XM_029562379.1 → XP_029418239.1  UBX domain-containing protein 2B isoform X4

      Conserved Domains (2) summary
      pfam08059
      Location:146 → 220
      SEP; SEP domain
      cl28922
      Location:224 → 277
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    3. XM_008830832.3 → XP_008829054.1  UBX domain-containing protein 2B isoform X1

      UniProtKB/TrEMBL
      A0A8C6R4M1
      Related
      ENSNGAP00000012854.1, ENSNGAT00000018426.1
      Conserved Domains (2) summary
      smart00553
      Location:140 → 232
      SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
      cl28922
      Location:250 → 331
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

    4. XM_029562378.1 → XP_029418238.1  UBX domain-containing protein 2B isoform X3

      Conserved Domains (1) summary
      pfam08059
      Location:146 → 220
      SEP; SEP domain

    5. XM_029562380.1 → XP_029418240.1  UBX domain-containing protein 2B isoform X5

      Conserved Domains (1) summary
      pfam08059
      Location:146 → 189
      SEP; SEP domain

    RNA

    1. XR_003849196.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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