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    LOC103690071 interaptin-like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 103690071, updated on 17-Aug-2024

    Summary

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    Symbol
    LOC103690071provided by RGD
    Full Name
    interaptin-likeprovided by RGD
    Primary source
    RGD:9152346
    See related
    AllianceGenome:RGD:9152346
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Ankrd26
    Expression
    Restricted expression toward (RPKM 106.7) See more
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    Genomic context

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    See LOC103690071 in Genome Data Viewer
    Location:
    17q12.1
    Exon count:
    77
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (62311856..62592701, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (57621542..57900975, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (62667503..62910504, complement)

    Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene cyclin Y Neighboring gene uncharacterized LOC100909729 Neighboring gene POTE ankyrin domain family member D Neighboring gene anillin, actin binding protein-like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    ankyrin repeat domain-containing protein 26-like; trichohyalin-like
    Names
    ankyrin repeat domain 26
    testis-specific transcript

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086035.1 Reference GRCr8

      Range
      62311856..62592701 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063277012.1 → XP_063133082.1  ankyrin repeat domain-containing protein 26-like isoform X2

    2. XM_063277026.1 → XP_063133096.1  ankyrin repeat domain-containing protein 26-like isoform X16

    3. XM_063277025.1 → XP_063133095.1  ankyrin repeat domain-containing protein 26-like isoform X15

    4. XM_063277016.1 → XP_063133086.1  ankyrin repeat domain-containing protein 26-like isoform X6

    5. XM_063277015.1 → XP_063133085.1  ankyrin repeat domain-containing protein 26-like isoform X5

    6. XM_063277018.1 → XP_063133088.1  ankyrin repeat domain-containing protein 26-like isoform X8

    7. XM_063277013.1 → XP_063133083.1  ankyrin repeat domain-containing protein 26-like isoform X3

    8. XM_063277019.1 → XP_063133089.1  ankyrin repeat domain-containing protein 26-like isoform X9

    9. XM_063277014.1 → XP_063133084.1  ankyrin repeat domain-containing protein 26-like isoform X4

    10. XM_063277017.1 → XP_063133087.1  ankyrin repeat domain-containing protein 26-like isoform X7

    11. XM_039096491.2 → XP_038952419.1  ankyrin repeat domain-containing protein 26-like isoform X1

      Conserved Domains (8) summary
      PTZ00121
      Location:463 → 995
      PTZ00121; MAEBL; Provisional
      PLN02939
      Location:464 → 675
      PLN02939; transferase, transferring glycosyl groups
      COG1196
      Location:302 → 500
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:1624 → 2206
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      sd00045
      Location:82 → 113
      ANK; ANK repeat [structural motif]
      pfam09726
      Location:1920 → 2151
      Macoilin; Macoilin family
      pfam12001
      Location:2174 → 2279
      DUF3496; Domain of unknown function (DUF3496)
      pfam12796
      Location:87 → 179
      Ank_2; Ankyrin repeats (3 copies)

    12. XM_063277011.1 → XP_063133081.1  ankyrin repeat domain-containing protein 26-like isoform X1

    13. XM_063277020.1 → XP_063133090.1  trichohyalin-like isoform X10

    14. XM_063277024.1 → XP_063133094.1  ankyrin repeat domain-containing protein 26-like isoform X14

    15. XM_063277021.1 → XP_063133091.1  ankyrin repeat domain-containing protein 26-like isoform X11

    16. XM_063277022.1 → XP_063133092.1  ankyrin repeat domain-containing protein 26-like isoform X12

    17. XM_063277023.1 → XP_063133093.1  ankyrin repeat domain-containing protein 26-like isoform X13

    Nucleotide Protein Strain
    Heading Accession and Version

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