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    LOC103654984 wall-associated receptor kinase 2 [ Zea mays ]

    Gene ID: 103654984, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC103654984
    Gene description
    wall-associated receptor kinase 2
    Locus tag
    ZEAMMB73_Zm00001d054062
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G010091
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    Genomic context

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    See LOC103654984 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 4 NC_050099.1 (248949639..248955705, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 4 NC_024462.2 (245653547..245659610, complement)

    Chromosome 4 - NC_050099.1Genomic Context describing neighboring genes Neighboring gene nitrate transport 2 Neighboring gene putative high affinity nitrate transporter Neighboring gene late embryogenesis abundant protein, group 3 Neighboring gene uncharacterized LOC109945655

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables polysaccharide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell surface receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    wall-associated receptor kinase 2
    Names
    Putative wall-associated receptor protein kinase family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050099.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      248949639..248955705 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020552968.2 → XP_020408557.1  wall-associated receptor kinase 2

      UniProtKB/TrEMBL
      A0A1D6QUV7, A0A804P5H9
      Conserved Domains (3) summary
      cd00054
      Location:295 → 328
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      pfam13947
      Location:25 → 129
      GUB_WAK_bind; Wall-associated receptor kinase galacturonan-binding
      cl21453
      Location:489 → 735
      PKc_like; Protein Kinases, catalytic domain

    2. XM_020552969.2 → XP_020408558.1  wall-associated receptor kinase 2

      UniProtKB/TrEMBL
      A0A1D6QUV7, A0A804P5H9
      Conserved Domains (3) summary
      cd00054
      Location:295 → 328
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      pfam13947
      Location:25 → 129
      GUB_WAK_bind; Wall-associated receptor kinase galacturonan-binding
      cl21453
      Location:489 → 735
      PKc_like; Protein Kinases, catalytic domain

    3. XM_020552971.2 → XP_020408560.1  wall-associated receptor kinase 2

      UniProtKB/TrEMBL
      A0A1D6QUV7, A0A804P5H9
      Conserved Domains (3) summary
      cd00054
      Location:295 → 328
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      pfam13947
      Location:25 → 129
      GUB_WAK_bind; Wall-associated receptor kinase galacturonan-binding
      cl21453
      Location:489 → 735
      PKc_like; Protein Kinases, catalytic domain

    4. XM_020552972.2 → XP_020408561.1  wall-associated receptor kinase 2

      UniProtKB/TrEMBL
      A0A1D6QUV7, A0A804P5H9
      Conserved Domains (3) summary
      cd00054
      Location:295 → 328
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      pfam13947
      Location:25 → 129
      GUB_WAK_bind; Wall-associated receptor kinase galacturonan-binding
      cl21453
      Location:489 → 735
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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