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    LOC103642138 uncharacterized LOC103642138 [ Zea mays ]

    Gene ID: 103642138, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC103642138
    Gene description
    uncharacterized LOC103642138
    Locus tag
    ZEAMMB73_Zm00001d026485
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    GRMZM2G104268; GRMZM2G104288
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    Genomic context

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    See LOC103642138 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 10 NC_050105.1 (148328539..148341606)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 10 NC_024468.2 (146873169..146885878)

    Chromosome 10 - NC_050105.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111590308 Neighboring gene NADPH--cytochrome P450 reductase Neighboring gene uncharacterized LOC103642140 Neighboring gene uncharacterized LOC103642139 Neighboring gene ethylene-responsive transcription factor ERF003

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the maize endosperm transcriptome and its comparison to the rice genome. Lai J, et al. Genome Res, 2004 Oct. PMID 15466291, Free PMC Article
    2. Insights into corn genes derived from large-scale cDNA sequencing. Alexandrov NN, et al. Plant Mol Biol, 2009 Jan. PMID 18937034, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At4g17616
    Names
    Protein FAR1-RELATED SEQUENCE 6
    pentatricopeptide repeat-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050105.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      148328539..148341606
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_035963573.1 → XP_035819466.1  pentatricopeptide repeat-containing protein At4g17616

      UniProtKB/TrEMBL
      A0A3L6G8X4, K7U7I1
      Conserved Domains (2) summary
      sd00004
      Location:562 → 591
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:537 → 572
      PPR_2; PPR repeat family

    2. XM_035963572.1 → XP_035819465.1  pentatricopeptide repeat-containing protein At4g17616

      UniProtKB/TrEMBL
      A0A3L6G8X4, K7U7I1
      Conserved Domains (2) summary
      sd00004
      Location:562 → 591
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:537 → 572
      PPR_2; PPR repeat family

    3. XM_020546138.2 → XP_020401727.1  pentatricopeptide repeat-containing protein At4g17616

      UniProtKB/TrEMBL
      A0A3L6G8X4, K7U7I1
      Conserved Domains (2) summary
      sd00004
      Location:562 → 591
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:537 → 572
      PPR_2; PPR repeat family

    4. XM_020546142.3 → XP_020401731.1  pentatricopeptide repeat-containing protein At4g17616

      UniProtKB/TrEMBL
      A0A3L6G8X4, K7U7I1
      Conserved Domains (2) summary
      sd00004
      Location:562 → 591
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:537 → 572
      PPR_2; PPR repeat family

    5. XM_035963571.1 → XP_035819464.1  pentatricopeptide repeat-containing protein At4g17616

      UniProtKB/TrEMBL
      A0A3L6G8X4, K7U7I1
      Conserved Domains (2) summary
      sd00004
      Location:562 → 591
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:537 → 572
      PPR_2; PPR repeat family

    6. XM_020546139.2 → XP_020401728.1  pentatricopeptide repeat-containing protein At4g17616

      UniProtKB/TrEMBL
      A0A3L6G8X4, K7U7I1
      Conserved Domains (2) summary
      sd00004
      Location:562 → 591
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:537 → 572
      PPR_2; PPR repeat family

    7. XM_020546137.2 → XP_020401726.1  pentatricopeptide repeat-containing protein At4g17616

      UniProtKB/TrEMBL
      A0A3L6G8X4, K7U7I1
      Conserved Domains (2) summary
      sd00004
      Location:562 → 591
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:537 → 572
      PPR_2; PPR repeat family

    8. XM_020546141.2 → XP_020401730.1  pentatricopeptide repeat-containing protein At4g17616

      UniProtKB/TrEMBL
      A0A3L6G8X4, K7U7I1
      Conserved Domains (2) summary
      sd00004
      Location:562 → 591
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:537 → 572
      PPR_2; PPR repeat family

    9. XM_020546140.2 → XP_020401729.1  pentatricopeptide repeat-containing protein At4g17616

      UniProtKB/TrEMBL
      A0A3L6G8X4, K7U7I1
      Conserved Domains (2) summary
      sd00004
      Location:562 → 591
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:537 → 572
      PPR_2; PPR repeat family

    10. XM_035963574.1 → XP_035819467.1  pentatricopeptide repeat-containing protein At4g17616

      UniProtKB/TrEMBL
      A0A3L6G8X4, K7U7I1
      Conserved Domains (2) summary
      sd00004
      Location:562 → 591
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:537 → 572
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version

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