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    LOC103503297 probable WRKY transcription factor 14 [ Cucumis melo (muskmelon) ]

    Gene ID: 103503297, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC103503297
    Gene description
    probable WRKY transcription factor 14
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis melo
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC103503297 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 12 NC_066868.1 (20028995..20032609, complement)
    101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007547662.1 (81858..85520)

    Chromosome 12 - NC_066868.1Genomic Context describing neighboring genes Neighboring gene protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like Neighboring gene pentatricopeptide repeat-containing protein At4g21300 Neighboring gene protein DETOXIFICATION 31-like Neighboring gene protein PHLOEM PROTEIN 2-LIKE A1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable WRKY transcription factor 14

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Genomic

    1. NC_066868.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

      Range
      20028995..20032609 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008467435.3 → XP_008465657.1  probable WRKY transcription factor 14

      UniProtKB/TrEMBL
      A0A1S3CPD8, A0A1S3CQV3
      Conserved Domains (1) summary
      smart00774
      Location:202 → 260
      WRKY; DNA binding domain
    Nucleotide Protein
    Heading Accession and Version

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