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    LOC103499808 protein POST-ILLUMINATION CHLOROPHYLL FLUORESCENCE INCREASE, chloroplastic [ Cucumis melo (muskmelon) ]

    Gene ID: 103499808, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC103499808
    Gene description
    protein POST-ILLUMINATION CHLOROPHYLL FLUORESCENCE INCREASE, chloroplastic
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis melo
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC103499808 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 1 NC_066857.1 (35322764..35325904, complement)
    101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546327.1 (399941..402939)

    Chromosome 1 - NC_066857.1Genomic Context describing neighboring genes Neighboring gene pre-mRNA-processing-splicing factor 8A Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene protein LURP-one-related 12-like Neighboring gene cucumber peeling cupredoxin-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in chlororespiration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in thylakoid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein POST-ILLUMINATION CHLOROPHYLL FLUORESCENCE INCREASE, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Genomic

    1. NC_066857.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

      Range
      35322764..35325904 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008462905.3 → XP_008461127.1  protein POST-ILLUMINATION CHLOROPHYLL FLUORESCENCE INCREASE, chloroplastic

      UniProtKB/TrEMBL
      A0A1S3CEG1, A0A5A7UVM9
      Conserved Domains (1) summary
      pfam16760
      Location:109 → 183
      CBM53; Starch/carbohydrate-binding module (family 53)
    Nucleotide Protein
    Heading Accession and Version

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