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    LOC103496448 putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [ Cucumis melo (muskmelon) ]

    Gene ID: 103496448, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC103496448
    Gene description
    putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis melo
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC103496448 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 3 NC_066859.1 (23478562..23485338, complement)
    101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546307.1 (468249..475025)

    Chromosome 3 - NC_066859.1Genomic Context describing neighboring genes Neighboring gene exocyst complex component SEC8 Neighboring gene kinesin-like protein KIN-UC Neighboring gene uncharacterized LOC103496447 Neighboring gene glycerol-3-phosphate dehydrogenase SDP6, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pseudouridine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plastid translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Genomic

    1. NC_066859.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

      Range
      23478562..23485338 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008458297.3 → XP_008456519.2  putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A1S3C3I9

    2. XM_017046480.2 → XP_016901969.2  putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic isoform X2

      UniProtKB/TrEMBL
      A0A1S4E166
    Nucleotide Protein
    Heading Accession and Version

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