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    LOC103494115 actin-related protein 4 [ Cucumis melo (muskmelon) ]

    Gene ID: 103494115, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC103494115
    Gene description
    actin-related protein 4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis melo
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC103494115 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 2 NC_066858.1 (23687277..23695516)
    101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546297.1 (1547536..1555777, complement)

    Chromosome 2 - NC_066858.1Genomic Context describing neighboring genes Neighboring gene protein ASPARTIC PROTEASE IN GUARD CELL 1-like Neighboring gene protein ASPARTIC PROTEASE IN GUARD CELL 1 Neighboring gene carbon catabolite repressor protein 4 homolog 3 Neighboring gene uncharacterized LOC103494113

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of NuA4 histone acetyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of SWI/SNF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    actin-related protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Genomic

    1. NC_066858.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

      Range
      23687277..23695516
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008455160.3 → XP_008453382.1  actin-related protein 4

      UniProtKB/TrEMBL
      A0A1S3BW56, A0A5A7USC1
      Conserved Domains (2) summary
      pfam00022
      Location:7 → 445
      Actin; Actin
      cl17037
      Location:6 → 444
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily
    Nucleotide Protein
    Heading Accession and Version

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