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    LOC103493873 uncharacterized LOC103493873 [ Cucumis melo (muskmelon) ]

    Gene ID: 103493873, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC103493873
    Gene description
    uncharacterized LOC103493873
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis melo
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    See LOC103493873 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current USDA_Cmelo_AY_1.0 (GCF_025177605.1) 7 NC_066863.1 (13779..37716)
    101 previous assembly ASM31304v1 (GCF_000313045.1) Unplaced Scaffold NW_007546296.1 (4217588..4237445, complement)

    Chromosome 7 - NC_066863.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC127150292 Neighboring gene uncharacterized LOC103493872 Neighboring gene uncharacterized LOC103493869

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron-sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA base methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC103493873
    Names
    dual-specificity RNA methyltransferase RlmN

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis melo Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USDA_Cmelo_AY_1.0 Primary Assembly

    Genomic

    1. NC_066863.1 Reference USDA_Cmelo_AY_1.0 Primary Assembly

      Range
      13779..37716
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008454828.3 → XP_008453050.2  uncharacterized protein LOC103493873 isoform X1

    2. XM_008454829.3 → XP_008453051.1  uncharacterized protein LOC103493873 isoform X2

      UniProtKB/TrEMBL
      A0A1S3BV96, A0A1S3BVB5
      Conserved Domains (2) summary
      COG0820
      Location:53 → 387
      RlmN; Adenine C2-methylase RlmN of 23S rRNA A2503 and tRNA A37 [Translation, ribosomal structure and biogenesis]
      cl18962
      Location:46 → 387
      Radical_SAM; Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. ...
    Nucleotide Protein
    Heading Accession and Version

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